3VAX

Crytal structure of DndA from streptomyces lividans

Structural Biology Knowledgebase: 3VAX SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.4 Å
  • R-Value Free: 0.234
  • R-Value Work: 0.192

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 3VAX

Classification: Transferase

Total Structure Weight: 87066.93

Macromolecule Entities
Molecule Chains Length Organism Details
Putative uncharacterized protein dndA A, B 400 Streptomyces lividans Fragment: UNP residues 19-397
Mutation: C327S
Gene Name(s): dndA SLG80
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
PLP
Query on PLP

A, B PYRIDOXAL-5'-PHOSPHATE
VITAMIN B6 Phosphate (Synonym)
C8 H10 N O6 P
NGVDGCNFYWLIFO-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.4 Å
  • R-Value Free: 0.234
  • R-Value Work: 0.192
  • Space Group: P 1 2 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 77.90 α = 90.00
b = 67.28 β = 97.04
c = 85.56 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2011-12-30
  • Released Date: 2013-01-02
  • Deposition author(s): Zhang, Z., Chen, F., Lin, K., Wu, G.

Revision History

No revisions since initial release