3V3M

Severe Acute Respiratory Syndrome Coronavirus (SARS-CoV) 3CL Protease in Complex with N-[(1R)-2-(tert-butylamino)-2-oxo-1-(pyridin-3-yl)ethyl]-N-(4-tert-butylphenyl)furan-2-carboxamide inhibitor.

Structural Biology Knowledgebase: 3V3M SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.96 Å
  • R-Value Free: 0.236
  • R-Value Work: 0.189

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 3V3M

Classification: HYDROLASE / HYDROLASE INHIBITOR

Total Structure Weight: 34466.67

Macromolecule Entities
Molecule Chains Length Organism Details
3C-like proteinase A 306 Severe acute respiratory syndrome-related coronavirus EC#: 3.4.19.12 IUBMB 3.4.22 IUBMB 3.4.22.69 IUBMB
Gene Name(s): 1a

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
0EN
Query on 0EN

A N-[(1R)-2-(tert-butylamino)-2-oxo-1-(pyridin- 3-yl)ethyl]-N-(4-tert-butylphenyl)furan-2- carboxamide
C26 H31 N3 O3
JXGIYKRRPGCLFV-JOCHJYFZSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
DMS
Query on DMS

A DIMETHYL SULFOXIDE
C2 H6 O S
IAZDPXIOMUYVGZ-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
0EN N/A in BindingDB
IC50: 4800 nM  BindingMOAD
IC50: 4800 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.96 Å
  • R-Value Free: 0.236
  • R-Value Work: 0.189
  • Space Group: C 1 2 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 106.73 α = 90.00
b = 82.67 β = 106.03
c = 53.12 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2011-12-13
  • Released Date: 2013-01-16
  • Deposition author(s): Jacobs, J., Grum-Tokars, V., Zhou, Y., Turlington, M., Saldanha, S.A., Chase, P., Eggler, A., Dawson, E.S., Baez-Santos, Y.M., Tomar, S., Mielech, A.M., Baker, S.C., Lindsley, C.W., Hodder, P., Mesecar, A., Stauffer, S.R.

Revision History

  • 2013-02-13
    Type: Citation | Details: Citation update