3UYB

X-ray crystal structure of the ruthenium complex [Ru(tap)2(dppz)]2+ bound to d(TCGGTACCGA)

Structural Biology Knowledgebase: 3UYB SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.5 Å
  • R-Value Free: 0.167
  • R-Value Work: 0.127

Literature

Macromolecules
Sequence Display for 3UYB

Classification: DNA

Total Structure Weight: 4677.84

Macromolecule Entities
Molecule Chains Length Organism Details
5'-D(*TP*CP*GP*GP*TP*AP*CP*CP*GP*A)-3' A 10 synthetic

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
RKL
Query on RKL

A Ru(tap)2(dppz) complex
C38 H22 N12 Ru
PIKVAZQLFXBUSD-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
BA
Query on BA

A BARIUM ION
Ba
XDFCIPNJCBUZJN-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.5 Å
  • R-Value Free: 0.167
  • R-Value Work: 0.127
  • Space Group: P 43 21 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 54.38 α = 90.00
b = 54.38 β = 90.00
c = 29.00 γ = 90.00

Structure Validation

View Full Validation Report



Entry History

Deposition Data

  • Deposited Date: 2011-12-06
  • Released Date: 2013-01-16
  • Deposition author(s): Niyazi, H.N., Texeira, S.C.M., Mitchell, E.P., Cardin, J.C., Forsyth, V.T.
  • Previous versions: 3UYA

Revision History

  • 2015-04-29
    Type: Other | Details: supersede 3uya