3UVQ

Human p38 MAP Kinase in Complex with a Dibenzosuberone Derivative

Structural Biology Knowledgebase: 3UVQ SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.2 Å
  • R-Value Free: 0.318
  • R-Value Work: 0.236

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 3UVQ

Classification: TRANSFERASE / TRANSFERASE INHIBITOR

Total Structure Weight: 42088.39

Macromolecule Entities
Molecule Chains Length Organism Details
Mitogen-activated protein kinase 14 A 360 Homo sapiens EC#: 2.7.11.24 IUBMB
Gene Name(s): MAPK14 Gene View CSBP CSBP1 CSBP2 CSPB1 MXI2 SAPK2A
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
FS8
Query on FS8

A N-{5-[(7-{[(2R)-2,3-dihydroxypropyl]oxy}- 5-oxo-10,11-dihydro-5H-dibenzo[a,d][7]annulen- 2-yl)amino]-2-fluorophenyl}benzamide
C31 H27 F N2 O5
ZPBRNNLSMHDHFY-XMMPIXPASA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
BOG
Query on BOG

A B-OCTYLGLUCOSIDE
C14 H28 O6
HEGSGKPQLMEBJL-RKQHYHRCSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
FS8 N/A in BindingDB
N/A in BindingMoad
Kd: 17 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.2 Å
  • R-Value Free: 0.318
  • R-Value Work: 0.236
  • Space Group: P 21 21 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 66.10 α = 90.00
b = 74.29 β = 90.00
c = 77.73 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2011-11-30
  • Released Date: 2012-12-05
  • Deposition author(s): Mayer-Wrangowski, S.C., Richters, A., Gruetter, C., Rauh, D.

Revision History

  • 2013-07-17
    Type: Citation | Details: Citation update
  • 2013-01-16
    Type: Entry title | Details: update title
  • 2013-01-16
    Type: Citation | Details: Citation update