3UQU

Crystal structure of BACE1 with its inhibitor

Structural Biology Knowledgebase: 3UQU SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.7 Å
  • R-Value Free: 0.195
  • R-Value Work: 0.163

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 3UQU

Classification: HYDROLASE / HYDROLASE INHIBITOR

Total Structure Weight: 49274.88

Macromolecule Entities
Molecule Chains Length Organism Details
Beta-secretase 1 A 433 Homo sapiens EC#: 3.4.23.46 IUBMB 4.3.1.23 IUBMB
Fragment: UNP residues 43-454
Mutation: K75A, E77A
Gene Name(s): BACE1 Gene View BACE KIAA1149
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 4 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
ZPX
Query on ZPX

A N-[(1R)-1-(4-fluorophenyl)ethyl]-N'-[(2S,3S)- 3-hydroxy-1-phenyl-4-(1H-pyrazol-1-yl)butan- 2-yl]-5-[methyl(methylsulfonyl)amino]benzene- 1,3-dicarboxamide
C31 H34 F N5 O5 S
YTBFVFURRJQMRL-AUDJAPFVSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
SO4
Query on SO4

A SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
URE
Query on URE

A UREA
C H4 N2 O
XSQUKJJJFZCRTK-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CL
Query on CL

A CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.7 Å
  • R-Value Free: 0.195
  • R-Value Work: 0.163
  • Space Group: C 2 2 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 104.47 α = 90.00
b = 128.24 β = 90.00
c = 76.18 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2011-11-21
  • Released Date: 2012-11-21
  • Deposition author(s): Chen, T.T., Chen, W.Y., Xu, Y.C.

Revision History

No revisions since initial release