3S6I

Schizosaccaromyces pombe 3-methyladenine DNA glycosylase (Mag1) in complex with abasic-DNA.

Structural Biology Knowledgebase: 3S6I SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.28 Å
  • R-Value Free: 0.225
  • R-Value Work: 0.185

Literature

Macromolecules
Sequence Display for 3S6I

Classification: HYDROLASE / DNA

Total Structure Weight: 66040.16


Macromolecule Entities
Molecule Chains Length Organism Details
DNA-3-methyladenine glycosylase 1 A, D 228 Schizosaccharomyces pombe EC#: 3.2.2.21 IUBMB
Gene Name(s): mag1 SPAPB24D3.04c
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Macromolecule Entities
Molecule Chains Length Organism Details
(5'-D(*TP*GP*TP*CP*CP*AP*(3DR)P*GP*TP*CP*T)-3') B, E 11 synthetic
(5'-D(*AP*AP*GP*AP*CP*TP*TP*GP*GP*AP*C)-3') C, F 11 synthetic

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NA
Query on NA

A, D SODIUM ION
Na
FKNQFGJONOIPTF-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
3DR
Query on 3DR
B, E DNA LINKING C5 H11 O6 P --

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.28 Å
  • R-Value Free: 0.225
  • R-Value Work: 0.185
  • Space Group: P 1 21 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 54.32 α = 90.00
b = 112.30 β = 99.55
c = 61.11 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2011-05-25
  • Released Date: 2011-12-14
  • Deposition author(s): Adhikary, S., Eichman, B.F.

Revision History

No revisions since initial release