3ROA

Candida glabrata dihydrofolate reductase complexed with NADPH and 6-ethyl-5-[(3R)-3-[3-methoxy-5-(morpholin-4-yl)phenyl]but-1-yn-1-yl]pyrimidine-2,4-diamine (UCP1004)

Structural Biology Knowledgebase: 3ROA SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.3 Å
  • R-Value Free: 0.258
  • R-Value Work: 0.204

Literature

Macromolecules
Sequence Display for 3ROA

Classification: OXIDOREDUCTASE / OXIDOREDUCTASE INHIBITOR

Total Structure Weight: 54743.25

Macromolecule Entities
Molecule Chains Length Organism Details
Strain CBS138 chromosome J complete sequence A, B 225 [candida] glabrata Gene Name(s): CAGL0J03894g
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NDP
Query on NDP

A, B NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
C21 H30 N7 O17 P3
ACFIXJIJDZMPPO-NNYOXOHSSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
06V
Query on 06V

A, B 6-ethyl-5-{(3R)-3-[3-methoxy-5-(morpholin- 4-yl)phenyl]but-1-yn-1-yl}pyrimidine-2,4- diamine
C21 H27 N5 O2
DNZHKQMESCYJCG-AWEZNQCLSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CL
Query on CL

A, B CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.3 Å
  • R-Value Free: 0.258
  • R-Value Work: 0.204
  • Space Group: P 41
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 42.71 α = 90.00
b = 42.71 β = 90.00
c = 229.47 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2011-04-25
  • Released Date: 2012-05-09
  • Deposition author(s): Paulsen, J.L., Anderson, A.C.

Revision History

  • 2013-11-20
    Type: Non-polymer description | Details: Change NAP to NDP to reflect NADPH in title
  • 2013-03-27
    Type: Citation | Details: Citation update