3RK5

CDK2 in complex with inhibitor RC-2-72

Structural Biology Knowledgebase: 3RK5 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.238
  • R-Value Work: 0.206

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 3RK5

Classification: TRANSFERASE / TRANSFERASE INHIBITOR

Total Structure Weight: 35102.03

Macromolecule Entities
Molecule Chains Length Organism Details
Cyclin-dependent kinase 2 A 306 Homo sapiens EC#: 2.7.11.22 IUBMB
Gene Name(s): CDK2 Gene View CDKN2

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
07Z
Query on 07Z

A 4-{[4-amino-5-(pyridin-3-ylcarbonyl)-1,3- thiazol-2-yl]amino}benzoic acid
C16 H12 N4 O3 S
GCUAWHJDWUEGRV-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
07Z N/A in BindingDB
N/A in BindingMoad
IC50: 4000 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.238
  • R-Value Work: 0.206
  • Space Group: P 21 21 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 53.35 α = 90.00
b = 71.83 β = 90.00
c = 72.42 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2011-04-17
  • Released Date: 2012-10-31
  • Deposition author(s): Betzi, S., Alam, R., Han, H., Becker, A., Schonbrunn, E.

Revision History

  • 2013-06-05
    Type: Citation | Details: Citation update
  • 2013-05-15
    Type: Citation | Details: Citation update