3R8V

CDK2 in complex with inhibitor RC-1-135

Structural Biology Knowledgebase: 3R8V SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Free: 0.229
  • R-Value Work: 0.192

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 3R8V

Classification: TRANSFERASE / TRANSFERASE INHIBITOR

Total Structure Weight: 35066.00

Macromolecule Entities
Molecule Chains Length Organism Details
Cyclin-dependent kinase 2 A 306 Homo sapiens EC#: 2.7.11.22 IUBMB
Gene Name(s): CDK2 Gene View CDKN2

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
Z62
Query on Z62

A [4-amino-2-(prop-2-en-1-ylamino)-1,3-thiazol- 5-yl](3-nitrophenyl)methanone
C13 H12 N4 O3 S
LDOOUPSIRAPDLT-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
Z62 N/A in BindingDB
N/A in BindingMoad
IC50: 2900 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Free: 0.229
  • R-Value Work: 0.192
  • Space Group: P 21 21 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 53.28 α = 90.00
b = 71.87 β = 90.00
c = 72.28 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2011-03-24
  • Released Date: 2012-10-31
  • Deposition author(s): Betzi, S., Alam, R., Han, H., Becker, A., Schonbrunn, E.

Revision History

  • 2013-06-05
    Type: Citation | Details: Citation update
  • 2013-05-15
    Type: Citation | Details: Citation update