3QDK

Structural insight on mechanism and diverse substrate selection strategy of ribulokinase

Structural Biology Knowledgebase: 3QDK SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.31 Å
  • R-Value Free: 0.274
  • R-Value Work: 0.224

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 3QDK

Classification: TRANSFERASE

Total Structure Weight: 251569.72

Macromolecule Entities
Molecule Chains Length Organism Details
Ribulokinase A, B, C, D 572 Bacillus halodurans EC#: 2.7.1.16 IUBMB
Gene Name(s): araB BH1872
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
QDK
Query on QDK

A L-ribulose
C5 H10 O5
ZAQJHHRNXZUBTE-UCORVYFPSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.31 Å
  • R-Value Free: 0.274
  • R-Value Work: 0.224
  • Space Group: P 1 21 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 56.68 α = 90.00
b = 88.84 β = 92.75
c = 230.52 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2011-01-18
  • Released Date: 2011-02-09
  • Deposition author(s): Agarwal, R., Burley, S.K., Swaminathan, S., New York SGX Research Center for Structural Genomics (NYSGXRC)
  • Previous versions: 3JVP

Revision History

  • 2011-12-28
    Type: Citation | Details: Citation update
  • 2011-09-28
    Type: Citation | Details: Citation update
  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4