3LEV

HIV-1 antibody 2F5 in complex with epitope scaffold ES2

Structural Biology Knowledgebase: 3LEV SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.5 Å
  • R-Value Free: 0.253
  • R-Value Work: 0.201

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 3LEV

Classification: IMMUNE SYSTEM

Total Structure Weight: 69582.96

Macromolecule Entities
Molecule Chains Length Organism Details
RNA polymerase sigma factor A 179 Thermus aquaticus Fragment: UNP RESIDUES 93-271
Mutation: Q105E, P107L, L108E, T110D, L111K, E112W, E113A, I115L, D116G, L117A, R119A, R155A, R247G, K249A
Gene Name(s): sigA
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
2F5 ANTIBODY LIGHT CHAIN L 214 Homo sapiens
2F5 ANTIBODY HEAVY CHAIN H 237 Homo sapiens

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
ATP
Query on ATP

H ADENOSINE-5'-TRIPHOSPHATE
C10 H16 N5 O13 P3
ZKHQWZAMYRWXGA-KQYNXXCUSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
1PE
Query on 1PE

L PENTAETHYLENE GLYCOL
PEG400 (Synonym)
C10 H22 O6
JLFNLZLINWHATN-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
GOL
Query on GOL

H GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.5 Å
  • R-Value Free: 0.253
  • R-Value Work: 0.201
  • Space Group: P 21 21 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 58.51 α = 90.00
b = 63.93 β = 90.00
c = 200.02 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2010-01-15
  • Released Date: 2010-09-29
  • Deposition author(s): Ofek, G., Guenaga, F.J., Schief, W.R., Skinner, J., Baker, D., Wyatt, R., Kwong, P.D.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4