3CLC

Crystal Structure of the Restriction-Modification Controller Protein C.Esp1396I Tetramer in Complex with its Natural 35 Base-Pair Operator

Structural Biology Knowledgebase: 3CLC SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.8 Å
  • R-Value Free: 0.239
  • R-Value Work: 0.207

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 3CLC

Classification: TRANSCRIPTION REGULATOR / DNA

Total Structure Weight: 59664.71


Macromolecule Entities
Molecule Chains Length Organism Details
Regulatory protein A, B, C, D 82 Enterobacter sp. Gene Name(s): esp1396IC
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Macromolecule Entities
Molecule Chains Length Organism Details
35-MER E 35 synthetic Operator DNA
35-MER F 35 synthetic Operator DNA

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
MG
Query on MG

E, F MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.8 Å
  • R-Value Free: 0.239
  • R-Value Work: 0.207
  • Space Group: P 65

Unit Cell:

Length (Å) Angle (°)
a = 104.48 α = 90.00
b = 104.48 β = 90.00
c = 139.29 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2008-03-18
  • Released Date: 2008-07-29
  • Deposition author(s): McGeehan, J.E., Streeter, S.D., Thresh, S.J., Ball, N., Ravelli, R.B., Kneale, G.G.

Revision History

  • 2011-07-13
    Type: Flag residual B-value | Details: Tagged residual B temperature factor
  • 2011-07-13
    Type: Source and taxonomy | Details: Removed strain from scientific name
  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4