2YEJ

HSP90 INHIBITORS AND DRUGS FROM FRAGMENT AND VIRTUAL SCREENING

Structural Biology Knowledgebase: 2YEJ SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.2 Å
  • R-Value Free: 0.349
  • R-Value Work: 0.246

Literature

Macromolecules
Sequence Display for 2YEJ

Classification: CHAPERONE

Total Structure Weight: 28920.80

Macromolecule Entities
Molecule Chains Length Organism Details
HEAT SHOCK PROTEIN HSP 90-ALPHA A 252 Homo sapiens Fragment: N-TERMINAL ATP-BINDING DOMAIN, RESIDUES 9-236
Mutation: E16H
Gene Name(s): HSP90AA1 Gene View HSP90A HSPC1 HSPCA
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
XQK
Query on XQK

A METHYL 5-ISOXAZOL-5-YL-3-METHYL-1H-PYRAZOLE- 4-CARBOXYLATE
C9 H9 N3 O3
ATKIWUMRVKGZOO-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ZZ3
Query on ZZ3

A 4-METHYL-6-(METHYLSULFANYL)-1,3,5-TRIAZIN- 2-AMINE
C5 H8 N4 S
CQORBMDQIUWHGC-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MG
Query on MG

A MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
ZZ3 IC50: 350000 nM (92) BindingDB

N/A in BindingMoad
N/A in PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.2 Å
  • R-Value Free: 0.349
  • R-Value Work: 0.246
  • Space Group: I 2 2 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 67.04 α = 90.00
b = 90.35 β = 90.00
c = 98.86 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2011-03-25
  • Released Date: 2011-06-15
  • Deposition author(s): Roughley, S.D., Hubbard, R.E., Baker, L.M.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4