2XKW

LIGAND BINDING DOMAIN OF HUMAN PPAR-GAMMA IN COMPLEX WITH THE AGONIST PIOGLITAZONE

Structural Biology Knowledgebase: 2XKW SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.02 Å
  • R-Value Free: 0.202
  • R-Value Work: 0.162

Literature

Macromolecules
Sequence Display for 2XKW

Classification: TRANSCRIPTION

Total Structure Weight: 63948.93

Macromolecule Entities
Molecule Chains Length Organism Details
PEROXISOME PROLIFERATOR-ACTIVATED RECEPTOR GAMMA A, B 274 Homo sapiens Fragment: LIGAND BINDING DOMAIN, RESIDUES 204-477
Gene Name(s): PPARG Gene View NR1C3
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
P1B
Query on P1B

A, B (5R)-5-{4-[2-(5-ethylpyridin-2-yl)ethoxy]benzyl}- 1,3-thiazolidine-2,4-dione
PIOGLITAZONE (Synonym)
C19 H20 N2 O3 S
HYAFETHFCAUJAY-QGZVFWFLSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
PE4
Query on PE4

A 2-{2-[2-(2-{2-[2-(2-ETHOXY-ETHOXY)-ETHOXY]- ETHOXY}-ETHOXY)-ETHOXY]-ETHOXY}-ETHANOL
POLYETHYLENE GLYCOL PEG4000 (Synonym)
C16 H34 O8
PJWQOENWHPEPKI-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
EPE
Query on EPE

B 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID
HEPES (Synonym)
C8 H18 N2 O4 S
JKMHFZQWWAIEOD-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.02 Å
  • R-Value Free: 0.202
  • R-Value Work: 0.162
  • Space Group: C 1 2 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 92.86 α = 90.00
b = 60.41 β = 103.01
c = 119.85 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2010-07-14
  • Released Date: 2011-08-10
  • Deposition author(s): Mueller, J.J., Schupp, M., Unger, T., Kintscher, U., Heinemann, U.

Revision History

No revisions since initial release