2XJ1

PROTEIN KINASE PIM-1 IN COMPLEX WITH SMALL MOLECULE INIBITOR

Structural Biology Knowledgebase: 2XJ1 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.13 Å
  • R-Value Free: 0.212
  • R-Value Work: 0.176

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 2XJ1

Classification: TRANSFERASE

Total Structure Weight: 34727.65

Macromolecule Entities
Molecule Chains Length Organism Details
PROTO-ONCOGENE SERINE/THREONINE-PROTEIN KINASE PIM-1 A 301 Homo sapiens EC#: 2.7.11.1 IUBMB
Fragment: KINASE DOMAIN, RESIDUES 14-313
Gene Name(s): PIM1 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
XJ1
Query on XJ1

A (2E)-3-(3-{6-[(TRANS-4-AMINOCYCLOHEXYL)AMINO]PYRAZIN- 2-YL}PHENYL)PROP-2-ENOIC ACID
C19 H22 N4 O2
GPICQYUBSFLTRN-OIQFLZLASA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
XJ1 IC50: 13 nM (100) BindingDB

Kd: 28 nM  BindingMOAD
Kd: 28 nM  PDBbind
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
SEP
Query on SEP
A L-PEPTIDE LINKING C3 H8 N O6 P SER

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.13 Å
  • R-Value Free: 0.212
  • R-Value Work: 0.176
  • Space Group: P 65
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 95.75 α = 90.00
b = 95.75 β = 90.00
c = 80.93 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2010-07-01
  • Released Date: 2011-02-23
  • Deposition author(s): Schulz, M.N., Fanghanel, J., Schafer, M., Badock, V., Briem, H., Boemer, U., Nguyen, D., Husemann, M., Hillig, R.C.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4