2X39

STRUCTURE OF 4-AMINO-N-(4-CHLOROBENZYL)-1-(7H-PYRROLO(2,3-D) PYRIMIDIN-4-YL)PIPERIDINE-4-CARBOXAMIDE BOUND TO PKB

Structural Biology Knowledgebase: 2X39 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.93 Å
  • R-Value Free: 0.226
  • R-Value Work: 0.166

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 2X39

Classification: TRANSFERASE

Total Structure Weight: 41368.86

Macromolecule Entities
Molecule Chains Length Organism Details
RAC-BETA SERINE/THREONINE-PROTEIN KINASE A 342 Homo sapiens EC#: 2.7.11.1 IUBMB
Fragment: KINASE CATALYTIC DOMAIN, RESIDUES 146-467
Details: PIFTIDE SEQUENCE (EEQEMFEDFDYIADW) REPLACES NATURAL PKB SEQUENCE AFTER RESIDUE 464C
Gene Name(s): AKT2 Gene View
GLYCOGEN SYNTHASE KINASE-3 BETA C 10 Homo sapiens EC#: 2.7.11.26 IUBMB
Fragment: RESIDUES 3-12
Details: PEPTIDE DERIVED FROM THE KINASE GSK3-BETA
Gene Name(s): GSK3B Gene View

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
X39
Query on X39

A 4-AMINO-N-(4-CHLOROBENZYL)-1-(7H-PYRROLO[2,3- D]PYRIMIDIN-4-YL)PIPERIDINE-4-CARBOXAMIDE
C19 H21 Cl N6 O
XQPFDQVEBGYLHB-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
X39 IC50: 2.2 - 66 nM (97) BindingDB

IC50: 30 nM  BindingMOAD
IC50: 2.2 nM  PDBbind
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
TPO
Query on TPO
A L-PEPTIDE LINKING C4 H10 N O6 P THR

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.93 Å
  • R-Value Free: 0.226
  • R-Value Work: 0.166
  • Space Group: P 21 21 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 45.27 α = 90.00
b = 60.52 β = 90.00
c = 132.59 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2010-01-22
  • Released Date: 2010-02-23
  • Deposition author(s): Davies, T.G., Mchardy, T., Caldwell, J.J., Cheung, K.M., Hunter, L.J., Taylor, K., Rowlands, M., Ruddle, R., Henley, A., Brandon, A.D., Valenti, M., Fazal, L., Seavers, L., Raynaud, F.I., Eccles, S.A., Aherne, G.W., Garrett, M.D., Collins, I.

Revision History

  • 2011-09-21
    Type: Version format compliance | Details: REMARK 4
  • 2011-09-21
    Type: Citation | Details: JRNL
  • 2011-09-21
    Type: Binding sites and description | Details: SITE,REMARK 800