2WA4

FACTOR INHIBITING HIF-1 ALPHA WITH N,3-DIHYDROXYBENZAMIDE

Structural Biology Knowledgebase: 2WA4 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.5 Å
  • R-Value Free: 0.267
  • R-Value Work: 0.211

Literature

Macromolecules
Sequence Display for 2WA4

Classification: OXIDOREDUCTASE

Total Structure Weight: 40786.88

Macromolecule Entities
Molecule Chains Length Organism Details
HYPOXIA-INDUCIBLE FACTOR 1-ALPHA INHIBITOR A 349 Homo sapiens EC#: 1.14.11.30 IUBMB 1.14.11.n4 IUBMB
Gene Name(s): HIF1AN Gene View FIH1
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
069
Query on 069

A N,3-DIHYDROXYBENZAMIDE
C7 H7 N O3
IRGXGFPSYHAJER-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
SO4
Query on SO4

A SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
FE2
Query on FE2

A FE (II) ION
Fe
CWYNVVGOOAEACU-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
069 N/A in BindingDB
IC50: 18000 nM  BindingMOAD
N/A in PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.5 Å
  • R-Value Free: 0.267
  • R-Value Work: 0.211
  • Space Group: P 41 21 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 87.11 α = 90.00
b = 87.11 β = 90.00
c = 150.91 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2009-02-02
  • Released Date: 2010-04-21
  • Deposition author(s): Conejo-Garcia, A., Lienard, B.M.R., Clifton, I.J., Mcdonough, M.A., Schofield, C.J.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4