2VV1

hPPARgamma Ligand binding domain in complex with 4-HDHA

Structural Biology Knowledgebase: 2VV1 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.2 Å
  • R-Value Free: 0.277
  • R-Value Work: 0.239

Literature

Macromolecules
Sequence Display for 2VV1

Classification: RECEPTOR

Total Structure Weight: 63604.55

Macromolecule Entities
Molecule Chains Length Organism Details
PEROXISOME PROLIFERATOR-ACTIVATED RECEPTOR GAMMA A 276 Homo sapiens Fragment: LIGAND BINDING DOMAIN, RESIDUES 202-475
Details: 4-HDHA
Gene Name(s): PPARG Gene View NR1C3
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
PEROXISOME PROLIFERATOR-ACTIVATED RECEPTOR GAMMA B 276 Homo sapiens Fragment: LIGAND BINDING DOMAIN, RESIDUES 202-475
Mutation: A209S
Details: 4-HDHA
Gene Name(s): PPARG Gene View NR1C3

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
4HD
Query on 4HD

A, B (4S,5E,7Z,10Z,13Z,16Z,19Z)-4-hydroxydocosa- 5,7,10,13,16,19-hexaenoic acid
C22 H32 O3
IFRKCNPQVIJFAQ-HBUOOPIGSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.2 Å
  • R-Value Free: 0.277
  • R-Value Work: 0.239
  • Space Group: C 1 2 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 93.20 α = 90.00
b = 62.20 β = 102.75
c = 118.89 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2008-06-02
  • Released Date: 2008-08-19
  • Deposition author(s): Itoh, T., Fairall, L., Schwabe, J.W.R.

Revision History

  • 2012-06-06
    Type: Citation | Details: JRNL
  • 2012-06-06
    Type: Non-polymer description | Details: FORMUL
  • 2012-06-06
    Type: Other | Details: REMARK 525,REMARK 280
  • 2012-06-06
    Type: Version format compliance | Details: REMARK 4
  • 2012-06-06
    Type: Refinement description | Details: REMARK 3
  • 2012-06-06
    Type: Source and taxonomy | Details: SOURCE
  • 2012-06-06
    Type: Biological assembly | Details: REMARK 300,REMARK 350
  • 2012-06-06
    Type: Geometry validation | Details: REMARK 500