2VM5

HUMAN BIR2 DOMAIN OF BACULOVIRAL INHIBITOR OF APOPTOSIS REPEAT- CONTAINING 1 (BIRC1)

Structural Biology Knowledgebase: 2VM5 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.220
  • R-Value Work: 0.178

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 2VM5

Classification: APOPTOSIS

Total Structure Weight: 12533.62

Macromolecule Entities
Molecule Chains Length Organism Details
BACULOVIRAL IAP REPEAT-CONTAINING PROTEIN 1 A 106 Homo sapiens Fragment: BIR2 DOMAIN, RESIDUES 141-244
Gene Name(s): NAIP Gene View BIRC1

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
GOL
Query on GOL

A GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ZN
Query on ZN

A ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.220
  • R-Value Work: 0.178
  • Space Group: P 21 21 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 36.50 α = 90.00
b = 43.10 β = 90.00
c = 57.00 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2008-01-23
  • Released Date: 2008-01-29
  • Deposition author(s): Herman, M.D., Welin, M., Arrowsmith, C.H., Berglund, H., Busam, R.D., Collins, R., Dahlgren, L.G., Edwards, A.M., Flodin, S., Flores, A., Graslund, S., Hammarstrom, M., Johansson, I., Kallas, A., Karlberg, T., Kotenyova, T., Lehtio, L., Moche, M., Nilsson, M.E., Nyman, T., Persson, C., Sagemark, J., Svensson, L., Thorsell, A.G., Tresaugues, L., van den Berg, S., Weigelt, J., Nordlund, P., Structural Genomics Consortium (SGC)

Revision History

  • 2011-12-28
    Type: Other | Details: REMARK 525
  • 2011-12-28
    Type: Version format compliance | Details: REMARK 4
  • 2011-12-28
    Type: Citation | Details: JRNL
  • 2011-12-28
    Type: Biological assembly | Details: REMARK 300,REMARK 350
  • 2011-12-28
    Type: Geometry validation | Details: REMARK 500
  • 2011-12-28
    Type: Function and keywords | Details: KEYWDS
  • 2011-12-28
    Type: Non-polymer description | Details: HETSYN,FORMUL