2VKI

Structure of the PDK1 PH domain K465E mutant


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.215
  • R-Value Work: 0.173

Literature

Macromolecules
Sequence Display for 2VKI

Classification: TRANSFERASE

Total Structure Weight: 17737.11

Macromolecule Entities
Molecule Chains Length Organism Details
3-PHOPSHOINOSITIDE DEPENDENT PROTEIN KINASE 1 A 148 Homo sapiens EC#: 2.7.11.1 IUBMB
Fragment: PLECKSTRIN HOMOLOGY (PH) DOMAIN, RESIDUES 409-556
Mutation: K465E
Gene Name(s): PDPK1 Gene View PDK1 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
SO4
Query on SO4

A SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
GOL
Query on GOL

A GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.215
  • R-Value Work: 0.173
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 34.01 α = 90.00
b = 67.06 β = 90.00
c = 67.80 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2007-12-19
  • Released Date: 2008-05-13
  • Deposition author(s): Komander, D., Bayascas, J.R., Deak, M., Alessi, D.R., van Aalten, D.M.F.

Revision History

  • 2011-07-13
    Type: Advisory, Refinement description, Version format compliance