2VHR

Atomic resolution (0.95A) structure of purified thaumatin I grown in sodium L-tartrate at 4 C

Structural Biology Knowledgebase: 2VHR SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 0.95 Å
  • R-Value Free: 0.133
  • R-Value Work: 0.123

Literature

Macromolecules
Sequence Display for 2VHR

Classification: PLANT PROTEIN

Total Structure Weight: 22803.61

Macromolecule Entities
Molecule Chains Length Organism Details
THAUMATIN-1 A 207 Thaumatococcus daniellii Gene Name(s):
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
TLA
Query on TLA

A L(+)-TARTARIC ACID
C4 H6 O6
FEWJPZIEWOKRBE-JCYAYHJZSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
GOL
Query on GOL

A GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 0.95 Å
  • R-Value Free: 0.133
  • R-Value Work: 0.123
  • Space Group: P 41 21 2

Unit Cell:

Length (Å) Angle (°)
a = 57.80 α = 90.00
b = 57.80 β = 90.00
c = 149.91 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2007-11-24
  • Released Date: 2009-02-10
  • Deposition author(s): Jakoncic, J., Asherie, N., Ginsberg, C.

Revision History

  • 2014-03-05
    Type: Non-polymer description | Details: FORMUL,HETNAM,HETSYN
  • 2014-03-05
    Type: Other | Details: REMARK 525,REMARK 900
  • 2014-03-05
    Type: Geometry validation | Details: REMARK 500
  • 2014-03-05
    Type: Biological assembly | Details: REMARK 300,REMARK 350
  • 2014-03-05
    Type: Version format compliance | Details: REMARK 4