2V22

REPLACE: A STRATEGY FOR ITERATIVE DESIGN OF CYCLIN BINDING GROOVE INHIBITORS

Structural Biology Knowledgebase: 2V22 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.6 Å
  • R-Value Free: 0.277
  • R-Value Work: 0.171

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 2V22

Classification: TRANSFERASE

Total Structure Weight: 129029.55

Macromolecule Entities
Molecule Chains Length Organism Details
CELL DIVISION PROTEIN KINASE 2 A, C 298 Homo sapiens EC#: 2.7.11.22 IUBMB
Details: TRIAZOL-1-METHYL-PYRIMIDIN INHIBITOR
Gene Name(s): CDK2 Gene View CDKN2
CYCLIN-A2 B, D 259 Homo sapiens Details: CAP-TETRAPEPTIDE INHIBITOR
Gene Name(s): CCNA2 Gene View CCN1 CCNA

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
C35
Query on C35

B, D N~2~-{[1-(4-CHLOROPHENYL)-5-METHYL-1H-1,2,4- TRIAZOL-3-YL]CARBONYL}-N~5~-(DIAMINOMETHYLIDENE)- L-ORNITHYL-L-LEUCYL-L-ISOLEUCYL-4-FLUORO- L-PHENYLALANINAMIDE
C37 H51 Cl F N11 O5
KPJZLROHGAJEAN-WRTIUAHLSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
C35 N/A in BindingDB
N/A in BindingMoad
IC50: 4100 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.6 Å
  • R-Value Free: 0.277
  • R-Value Work: 0.171
  • Space Group: P 21 21 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 74.69 α = 90.00
b = 113.57 β = 90.00
c = 156.02 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2007-05-31
  • Released Date: 2008-01-29
  • Deposition author(s): Andrews, M.J., Kontopidis, G., Mcinnes, C., Plater, A., Innes, L., Cowan, A., Jewsbury, P., Fischer, P.M.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4