2JDO

STRUCTURE OF PKB-BETA (AKT2) COMPLEXED WITH ISOQUINOLINE-5-SULFONIC ACID (2-(2-(4-CHLOROBENZYLOXY) ETHYLAMINO)ETHYL) AMIDE

Structural Biology Knowledgebase: 2JDO SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.210
  • R-Value Work: 0.175

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 2JDO

Classification: TRANSFERASE

Total Structure Weight: 41465.98

Macromolecule Entities
Molecule Chains Length Organism Details
RAC-BETA SERINE/THREONINE-PROTEIN KINASE A 342 Homo sapiens EC#: 2.7.11.1 IUBMB
Fragment: KINASE CATALYTIC DOMAIN, RESIDUES 146-467
Details: PIFTIDE SEQUENCE (EEQEMFEDFDYIADW) REPLACES NATURAL PKB SEQUENCE AFTER RESIDUE 464
Gene Name(s): AKT2 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
GLYCOGEN SYNTHASE KINASE-3 BETA C 10 Homo sapiens EC#: 2.7.11.26 IUBMB
Fragment: RESIDUES 3-12
Details: PEPTIDE DERIVED FROM THE KINASE GSK3-BETA
Gene Name(s): GSK3B Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
I5S
Query on I5S

A ISOQUINOLINE-5-SULFONIC ACID (2-(2-(4-CHLOROBENZYLOXY)ETHYLAMINO)ETHYL)AMIDE
C20 H22 Cl N3 O3 S
AUHWQSZMVMMRLM-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
EDO
Query on EDO

A 1,2-ETHANEDIOL
ETHYLENE GLYCOL (Synonym)
C2 H6 O2
LYCAIKOWRPUZTN-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
I5S IC50: 230 - 260 nM (97) BindingDB

IC50: 230 nM  BindingMOAD
IC50: 230 nM  PDBbind
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
TPO
Query on TPO
A L-PEPTIDE LINKING C4 H10 N O6 P THR

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.210
  • R-Value Work: 0.175
  • Space Group: P 21 21 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 45.26 α = 90.00
b = 60.70 β = 90.00
c = 132.57 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2007-01-11
  • Released Date: 2007-02-13
  • Deposition author(s): Davies, T.G., Verdonk, M.L., Graham, B., Saalau-Bethell, S., Hamlett, C.C.F., Mchardy, T., Collins, I., Garrett, M.D., Workman, P., Woodhead, S.J., Jhoti, H., Barford, D.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4