2ITL

The origin binding domain of the SV40 large T antigen bound to the functional pen palindrome DNA (23 bp)

Structural Biology Knowledgebase: 2ITL SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.65 Å
  • R-Value Free: 0.251
  • R-Value Work: 0.201

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 2ITL

Classification: DNA binding protein / DNA

Total Structure Weight: 45517.24


Macromolecule Entities
Molecule Chains Length Organism Details
large T antigen A, B 133 Simian virus 40 Fragment: Origin binding domain (residues 131-259)
Gene Name(s):
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Macromolecule Entities
Molecule Chains Length Organism Details
24-nt PEN element of the SV40 DNA origin W 24 synthetic
24-nt PEN element of the SV40 DNA origin C 24 synthetic


Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.65 Å
  • R-Value Free: 0.251
  • R-Value Work: 0.201
  • Space Group: C 1 2 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 83.20 α = 90.00
b = 64.10 β = 120.69
c = 79.18 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2006-10-19
  • Released Date: 2006-12-12
  • Deposition author(s): Bochkareva, E., Seitova, A, Bochkarev, A.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4