2G0H

Structure-based drug design of a novel family of PPAR partial agonists: virtual screening, x-ray crystallography and in vitro/in vivo biological activities

Structural Biology Knowledgebase: 2G0H SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.3 Å
  • R-Value Free: 0.293
  • R-Value Work: 0.238

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 2G0H

Classification: TRANSCRIPTION ACTIVATOR

Total Structure Weight: 63065.46

Macromolecule Entities
Molecule Chains Length Organism Details
Peroxisome proliferator-activated receptor gamma A, B 271 Homo sapiens Fragment: Ligand binding domain(residues 207-477)
Gene Name(s): PPARG Gene View NR1C3
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
SP3
Query on SP3

A, B N-[1-(4-FLUOROPHENYL)-3-(2-THIENYL)-1H-PYRAZOL- 5-YL]-3,5-BIS(TRIFLUOROMETHYL)BENZENESULFONAMIDE
C21 H12 F7 N3 O2 S2
BQSKQGGQDUBLNS-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
SP3 EC50: 0.78 nM (100) BindingDB
IC50: 23 nM (100) BindingDB

IC50: 22.7 nM  BindingMOAD
IC50: 22.7 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.3 Å
  • R-Value Free: 0.293
  • R-Value Work: 0.238
  • Space Group: P 1 21 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 56.30 α = 90.00
b = 88.90 β = 90.80
c = 58.45 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2006-02-13
  • Released Date: 2006-05-16
  • Deposition author(s): Lu, I.L., Peng, Y.H., Huang, C.F., Lin, Y.T., Hsu, J.T.A., Wu, S.Y.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4