2FKK

Crystal structure of the C-terminal domain of the bacteriophage T4 gene product 10

Structural Biology Knowledgebase: 2FKK SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.2 Å
  • R-Value Free: 0.136
  • R-Value Work: 0.119

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 2FKK

Classification: VIRAL PROTEIN

Total Structure Weight: 22961.72

Macromolecule Entities
Molecule Chains Length Organism Details
Baseplate structural protein Gp10 A 206 Enterobacteria phage t4 sensu lato Fragment: C-terminal domain
Mutation: A442E, A530T
Gene Name(s): 10

Small Molecules
Ligands 4 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
TRS
Query on TRS

A 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
TRIS BUFFER (Synonym)
C4 H12 N O3
LENZDBCJOHFCAS-UHFFFAOYSA-O
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
BR
Query on BR

A BROMIDE ION
Br
CPELXLSAUQHCOX-UHFFFAOYSA-M
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
PO3
Query on PO3

A PHOSPHITE ION
O3 P
AQSJGOWTSHOLKH-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
EDO
Query on EDO

A 1,2-ETHANEDIOL
ETHYLENE GLYCOL (Synonym)
C2 H6 O2
LYCAIKOWRPUZTN-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.2 Å
  • R-Value Free: 0.136
  • R-Value Work: 0.119
  • Space Group: P 3 2 1

Unit Cell:

Length (Å) Angle (°)
a = 69.84 α = 90.00
b = 69.84 β = 90.00
c = 119.67 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2006-01-04
  • Released Date: 2006-04-04
  • Deposition author(s): Leiman, P.G., Shneider, M.M., Mesyanzhinov, V.V., Rossmann, M.G.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4
  • 2011-07-13
    Type: Biological assembly | Details: Added software calculated values