2C37

RNASE PH CORE OF THE ARCHAEAL EXOSOME IN COMPLEX WITH U8 RNA

Structural Biology Knowledgebase: 2C37 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.8 Å
  • R-Value Free: 0.282
  • R-Value Work: 0.266

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 2C37

Classification: HYDROLASE

Total Structure Weight: 702874.69

Macromolecule Entities
Molecule Chains Length Organism Details
PROBABLE EXOSOME COMPLEX EXONUCLEASE 2 A, C, E..., G, I, K, M, O, Q, S, U, WA, C, E, G, I, K, M, O, Q, S, U, W 275 Sulfolobus solfataricus EC#: 3.1.13 IUBMB
Gene Name(s): rrp42 SSO0732 C20_023
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
PROBABLE EXOSOME COMPLEX EXONUCLEASE 1 B, D, F..., H, J, L, N, P, R, T, V, XB, D, F, H, J, L, N, P, R, T, V, X 248 Sulfolobus solfataricus EC#: 3.1.13 IUBMB
Gene Name(s): rrp41 SSO0735
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 4 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
U5P
Query on U5P

B, F, H, J, N, V, X URIDINE-5'-MONOPHOSPHATE
C9 H13 N2 O9 P
DJJCXFVJDGTHFX-XVFCMESISA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
RP5
Query on RP5

N 5-O-phosphono-beta-D-ribofuranose
4,,3S (Synonym)
C5 H11 O8 P
KTVPXOYAKDPRHY-TXICZTDVSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CL
Query on CL

B, D, F, H, J, L, N, P, R, T, V, X CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
NA
Query on NA

V SODIUM ION
Na
FKNQFGJONOIPTF-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.8 Å
  • R-Value Free: 0.282
  • R-Value Work: 0.266
  • Space Group: C 2 2 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 207.02 α = 90.00
b = 212.94 β = 90.00
c = 433.09 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2005-10-04
  • Released Date: 2005-11-23
  • Deposition author(s): Lorentzen, E., Conti, E.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4