2BRR

Complex of the neisserial PorA P1.4 epitope peptide and two Fab- fragments (antibody MN20B9.34)


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.95 Å
  • R-Value Free: 0.238
  • R-Value Work: 0.198

Literature

Macromolecules
Sequence Display for 2BRR

Classification: IMMUNE SYSTEM

Total Structure Weight: 97058.22

Macromolecule Entities
Molecule Chains Length Organism Details
MN20B9.34 ANTI-P1.4 ANTIBODY, FAB HEAVY CHAIN H, Y 225 Mus musculus
MN20B9.34 ANTI-P1.4 ANTIBODY, FAB LIGHT CHAIN L, X 215 Mus musculus
CLASS 1 OUTER MEMBRANE PROTEIN VARIABLE REGION 2 P 13 Neisseria meningitidis Fragment: EXTRACELLULAR LOOP 4 OF PORA SUBTYPE P1.4, RESIDUES 16-26
Details: N-TERMINUS ACETYLATED, C-TERMINUS AMIDATED
Gene Name(s): porA
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
SO4
Query on SO4

X, Y SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ACY
Query on ACY

X ACETIC ACID
C2 H4 O2
QTBSBXVTEAMEQO-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 2 Unique
ID Chains Type Formula 2D Diagram Parent
ACE
Query on ACE
P NON-POLYMER C2 H4 O --
NH2
Query on NH2
P NON-POLYMER H2 N --

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.95 Å
  • R-Value Free: 0.238
  • R-Value Work: 0.198
  • Space Group: P 1 21 1

Unit Cell:

Length (Å) Angle (°)
a = 53.67 α = 90.00
b = 63.83 β = 86.58
c = 124.70 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2005-05-11
  • Released Date: 2005-07-27
  • Deposition author(s): Oomen, C.J., Hoogerhout, P., Kuipers, B., Vidarsson, G., Van Alphen, L., Gros, P.

Revision History

  • Version 1_0: 2005-07-27

    Type: Initial release

  • Version 1_1: 2011-07-13

    Type: Advisory, Version format compliance

  • Version 1_2: 2012-05-16

    Type: Other