2BAN

Crystal structure of HIV-1 reverse transcriptase (RT) in complex with JANSSEN-R157208

Structural Biology Knowledgebase: 2BAN SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.95 Å
  • R-Value Free: 0.305
  • R-Value Work: 0.243

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 2BAN

Classification: TRANSFERASE

Total Structure Weight: 115167.42

Macromolecule Entities
Molecule Chains Length Organism Details
Reverse transcriptase P66 subunit A 560 Human immunodeficiency virus 1 EC#: 2.7.7.49 IUBMB
Fragment: RESIDUES 599-1158
Mutation: C280S
Gene Name(s): gag-pol
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Reverse transcriptase P51 subunit B 430 Human immunodeficiency virus 1 EC#: 2.7.7.49 IUBMB
Fragment: RESIDUES 599-1028
Mutation: C280S
Gene Name(s): gag-pol

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
357
Query on 357

A 5-ETHYL-3-[(2-METHOXYETHYL)METHYLAMINO]-6- METHYL-4-(3-METHYLBENZYL)PYRIDIN-2(1H)-ONE
C20 H28 N2 O2
USWKTQVAABDFSY-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MN
Query on MN

A MANGANESE (II) ION
Mn
WAEMQWOKJMHJLA-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
357 N/A in BindingDB
N/A in BindingMoad
IC50: 1 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.95 Å
  • R-Value Free: 0.305
  • R-Value Work: 0.243
  • Space Group: C 1 2 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 226.24 α = 90.00
b = 69.43 β = 106.49
c = 104.45 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2005-10-14
  • Released Date: 2005-12-06
  • Deposition author(s): Das, K., Arnold, E.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4