1ZCO

Crystal structure of pyrococcus furiosus 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase

Structural Biology Knowledgebase: 1ZCO SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.25 Å
  • R-Value Free: 0.231
  • R-Value Work: 0.182

Literature

Macromolecules
Sequence Display for 1ZCO

Classification: LYASE

Total Structure Weight: 58983.61

Macromolecule Entities
Molecule Chains Length Organism Details
2-dehydro-3-deoxyphosphoheptonate aldolase A, B 262 Pyrococcus furiosus EC#: 2.5.1.54 IUBMB
Mutation: K8D, D37E
Gene Name(s): PF1690
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
PEP
Query on PEP

A, B PHOSPHOENOLPYRUVATE
C3 H5 O6 P
DTBNBXWJWCWCIK-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MN
Query on MN

B MANGANESE (II) ION
Mn
WAEMQWOKJMHJLA-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CL
Query on CL

A, B CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.25 Å
  • R-Value Free: 0.231
  • R-Value Work: 0.182
  • Space Group: I 2 2 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 87.23 α = 90.00
b = 110.02 β = 90.00
c = 144.35 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2005-04-12
  • Released Date: 2005-10-18
  • Deposition author(s): Schofield, L.R., Anderson, B.F., Patchett, M.L., Norris, G.E., Jameson, G.B., Parker, E.J.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4
  • 2011-07-13
    Type: Biological assembly | Details: Added software calculated values