1YET

GELDANAMYCIN BOUND TO THE HSP90 GELDANAMYCIN-BINDING DOMAIN

Structural Biology Knowledgebase: 1YET SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Observed: 0.193

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 1YET

Classification: CHAPERONE PROTEIN

Total Structure Weight: 26231.64

Macromolecule Entities
Molecule Chains Length Organism Details
HEAT SHOCK PROTEIN 90 A 228 Homo sapiens Fragment: RESIDUES 9 - 236
Gene Name(s): HSP90AA1 Gene View HSP90A HSPC1 HSPCA
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
GDM
Query on GDM

A GELDANAMYCIN
C29 H40 N2 O9
QTQAWLPCGQOSGP-KSRBKZBZSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
GDM IC50: <10.0 - 780 nM (89 - 99) BindingDB
Kd: 152 - 1215 nM (91 - 99) BindingDB

N/A in BindingMoad
Kd: 1200 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Observed: 0.193
  • Space Group: P 1 21 1

Unit Cell:

Length (Å) Angle (°)
a = 53.70 α = 90.00
b = 44.30 β = 116.10
c = 54.65 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 1997-03-25
  • Released Date: 1998-04-22
  • Deposition author(s): Stebbins, C.E., Russo, A.A., Pavletich, N.P.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4