1RT5

HIV-1 REVERSE TRANSCRIPTASE COMPLEXED WITH UC10

Structural Biology Knowledgebase: 1RT5 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.9 Å
  • R-Value Free: 0.291
  • R-Value Work: 0.231

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 1RT5

Classification: NUCLEOTIDYLTRANSFERASE

Total Structure Weight: 116441.16

Macromolecule Entities
Molecule Chains Length Organism Details
HIV-1 REVERSE TRANSCRIPTASE A 560 Human immunodeficiency virus 1 EC#: 2.7.7.49 IUBMB
Mutation: C280X
Gene Name(s): gag-pol
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
HIV-1 REVERSE TRANSCRIPTASE B 440 Human immunodeficiency virus 1 EC#: 2.7.7.49 IUBMB
Gene Name(s): gag-pol

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
UC2
Query on UC2

A N-[4-CLORO-3-(T-BUTYLOXOME)PHENYL-2-METHYL- 3-FURAN-CARBOTHIAMIDE
UC10 (Synonym)
C17 H19 Cl N2 O2 S
PLGIIOKXCKDKEU-VXLYETTFSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
PO4
Query on PO4

A PHOSPHATE ION
O4 P
NBIIXXVUZAFLBC-UHFFFAOYSA-K
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
CSD
Query on CSD
A L-PEPTIDE LINKING C3 H7 N O4 S CYS

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.9 Å
  • R-Value Free: 0.291
  • R-Value Work: 0.231
  • Space Group: P 21 21 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 140.30 α = 90.00
b = 111.00 β = 90.00
c = 73.50 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 1998-07-29
  • Released Date: 1999-07-29
  • Deposition author(s): Ren, J., Stammers, D.K., Stuart, D.I.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4