1LPZ

CRYSTAL STRUCTURE OF FXA IN COMPLEX WITH 41.

Structural Biology Knowledgebase: 1LPZ SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.4 Å
  • R-Value Free: 0.279
  • R-Value Work: 0.179

Literature

Macromolecules
Sequence Display for 1LPZ

Classification: HYDROLASE

Total Structure Weight: 44267.10

Macromolecule Entities
Molecule Chains Length Organism Details
Blood coagulation factor Xa A 134 Homo sapiens EC#: 3.4.21.6 IUBMB
Fragment: light chain
Gene Name(s): F10 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Blood coagulation factor Xa B 254 Homo sapiens EC#: 3.4.21.6 IUBMB
Gene Name(s): F10 Gene View

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
CMB
Query on CMB

B 1-(3-carbamimidoylbenzyl)-N-(3,5-dichlorobenzyl)- 4-methyl-1H-indole-2-carboxamide
C25 H22 Cl2 N4 O
YAAKSJLUBVPBIM-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CA
Query on CA

B CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
CMB Ki: 25 nM (100) BindingDB

Ki: 25 nM  BindingMOAD
Ki: 25 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.4 Å
  • R-Value Free: 0.279
  • R-Value Work: 0.179
  • Space Group: P 21 21 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 56.30 α = 90.00
b = 72.00 β = 90.00
c = 78.30 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2002-05-08
  • Released Date: 2003-05-08
  • Deposition author(s): Schreuder, H.A., Brachvogel, V., Liesum, A.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4