1J7Y

Crystal structure of partially ligated mutant of HbA

Structural Biology Knowledgebase: 1J7Y SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.7 Å
  • R-Value Free: 0.201
  • R-Value Work: 0.155

Literature

Macromolecules
Sequence Display for 1J7Y

Classification: OXYGEN STORAGE / TRANSPORT

Total Structure Weight: 65084.06

Macromolecule Entities
Molecule Chains Length Organism Details
Hemoglobin A, C 141 Homo sapiens Fragment: alpha chain
Mutation: V1M, L29Y, H58Q
Gene Name(s): HBA1 Gene View HBA2 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Hemoglobin B, D 146 Homo sapiens Fragment: beta chain
Mutation: V1M, L28Y, H63Q
Gene Name(s): HBB Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
HEM
Query on HEM

A, B, C, D PROTOPORPHYRIN IX CONTAINING FE
HEME (Synonym)
C34 H32 Fe N4 O4
KABFMIBPWCXCRK-RGGAHWMASA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
SO4
Query on SO4

B SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CMO
Query on CMO

B, D CARBON MONOXIDE
C O
UGFAIRIUMAVXCW-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.7 Å
  • R-Value Free: 0.201
  • R-Value Work: 0.155
  • Space Group: P 1 21 1

Unit Cell:

Length (Å) Angle (°)
a = 62.57 α = 90.00
b = 82.47 β = 99.70
c = 53.69 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2001-05-19
  • Released Date: 2002-02-27
  • Deposition author(s): Miele, A.E., Draghi, F., Arcovito, A., Bellelli, A., Brunori, M., Travaglini-Allocatelli, C., Vallone, B.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4