1GX5

Hepatitis C Virus RNA Polymerase in Complex with GTP and Manganese

Structural Biology Knowledgebase: 1GX5 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.7 Å
  • R-Value Free: 0.223
  • R-Value Work: 0.193

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 1GX5

Classification: TRANSFERASE

Total Structure Weight: 61416.05

Macromolecule Entities
Molecule Chains Length Organism Details
RNA-DIRECTED RNA POLYMERASE A 536 Hepatitis c virus EC#: 2.7.7.48 IUBMB
Fragment: CATALYTIC DOMAIN, RESIDUES 2420-2955
Gene Name(s):
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
GTP
Query on GTP

A GUANOSINE-5'-TRIPHOSPHATE
C10 H16 N5 O14 P3
XKMLYUALXHKNFT-UUOKFMHZSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MN
Query on MN

A MANGANESE (II) ION
Mn
WAEMQWOKJMHJLA-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
MSE
Query on MSE
A L-PEPTIDE LINKING C5 H11 N O2 Se MET

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.7 Å
  • R-Value Free: 0.223
  • R-Value Work: 0.193
  • Space Group: P 21 21 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 67.08 α = 90.00
b = 96.22 β = 90.00
c = 96.00 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2002-03-27
  • Released Date: 2002-04-09
  • Deposition author(s): Bressanelli, S., Rey, F.A.

Revision History

  • 2015-09-16
    Type: Biological assembly | Details: REMARK 300,REMARK 350
  • 2015-09-16
    Type: Version format compliance | Details: REMARK 4
  • 2015-09-16
    Type: Polymer description | Details: COMPND
  • 2015-09-16
    Type: Source and taxonomy | Details: SOURCE
  • 2015-09-16
    Type: Binding sites and description | Details: SITE
  • 2015-09-16
    Type: Non-polymer description | Details: FORMUL
  • 2015-09-16
    Type: Geometry validation | Details: REMARK 500
  • 2015-09-16
    Type: Refinement description | Details: REMARK 3
  • 2015-09-16
    Type: Other | Details: REMARK 465,TER,REMARK 470,REMARK 525,REMARK 610
  • 2015-09-16
    Type: Atom nomenclature | Details: ATOM