1FM6

THE 2.1 ANGSTROM RESOLUTION CRYSTAL STRUCTURE OF THE HETERODIMER OF THE HUMAN RXRALPHA AND PPARGAMMA LIGAND BINDING DOMAINS RESPECTIVELY BOUND WITH 9-CIS RETINOIC ACID AND ROSIGLITAZONE AND CO-ACTIVATOR PEPTIDES.

Structural Biology Knowledgebase: 1FM6 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.1 Å
  • R-Value Free: 0.292
  • R-Value Work: 0.250

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 1FM6

Classification: TRANSCRIPTION

Total Structure Weight: 128065.31

Macromolecule Entities
Molecule Chains Length Organism Details
RETINOIC ACID RECEPTOR RXR-ALPHA A, U 238 Homo sapiens Fragment: LIGAND BINDING DOMAIN - RESIDUES 225 -462
Gene Name(s): RXRA Gene View NR2B1
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
PEROXISOME PROLIFERATOR ACTIVATED RECEPTOR GAMMA D, X 272 Homo sapiens Fragment: LIGAND BINDING DOMAIN - RESIDUES 206 - 477
Gene Name(s): PPARG Gene View NR1C3
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
STEROID RECEPTOR COACTIVATOR B, E, V, Y 25 Homo sapiens EC#: 2.3.1.48 IUBMB
Fragment: SRC-1 PEPTIDE
Gene Name(s): NCOA1 Gene View BHLHE74 SRC1
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
BRL
Query on BRL

D, X 2,4-THIAZOLIDIINEDIONE, 5-[[4-[2-(METHYL- 2-PYRIDINYLAMINO)ETHOXY]PHENYL]METHYL]-(9CL)
BRL49653; ROSIGLITAZONE (Synonym)
C18 H19 N3 O3 S
YASAKCUCGLMORW-HNNXBMFYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
9CR
Query on 9CR

A, U (9cis)-retinoic acid
C20 H28 O2
SHGAZHPCJJPHSC-ZVCIMWCZSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
BRL EC50: 2 - 2880 nM (98 - 100) BindingDB
IC50: 30 - 2000 nM (100) BindingDB
Kd: 7 - 4980 nM (100) BindingDB
Ki: 8 - 440 nM (100) BindingDB

N/A in BindingMoad
N/A in PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.1 Å
  • R-Value Free: 0.292
  • R-Value Work: 0.250
  • Space Group: P 1 21 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 49.26 α = 90.00
b = 222.36 β = 98.59
c = 55.29 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2000-08-16
  • Released Date: 2001-02-16
  • Deposition author(s): Gampe Jr., R.T., Montana, V.G., Lambert, M.H., Miller, A.B., Bledsoe, R.K., Milburn, M.V., Kliewer, S.A., Willson, T.M., Xu, H.E.

Revision History

  • 2012-12-26
    Type: Non-polymer description | Details: --
  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4