6LDH

REFINED CRYSTAL STRUCTURE OF DOGFISH M4 APO-LACTATE DEHYDROGENASE

Structural Biology Knowledgebase: 6LDH SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Observed: 0.202

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 6LDH

Classification: OXIDOREDUCTASE(CHOH(D)-NAD(A))

Total Structure Weight: 36545.72

Macromolecule Entities
Molecule Chains Length Organism Details
M4 APO-LACTATE DEHYDROGENASE A 330 Squalus acanthias EC#: 1.1.1.27 IUBMB
Mutation: W205N, N206V, L208S, K209I, E210K, E214L, L215D, D308N
Gene Name(s): ldha

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
SO4
Query on SO4

A SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
ACE
Query on ACE
A NON-POLYMER C2 H4 O --

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Observed: 0.202
  • Space Group: F 4 2 2

Unit Cell:

Length (Å) Angle (°)
a = 146.80 α = 90.00
b = 146.80 β = 90.00
c = 155.40 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 1987-11-25
  • Released Date: 1989-07-12
  • Deposition author(s): Abad-Zapatero, C., Rossmann, M.G.
  • Previous versions: 2LDH 4LDH

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4