5IXM

The LPS Transporter LptDE from Yersinia pestis, core complex


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.75 Å
  • R-Value Free: 0.261
  • R-Value Work: 0.212

Literature

Macromolecules
Sequence Display for 5IXM

Classification: TRANSPORT PROTEIN

Total Structure Weight: 355998.13

Macromolecule Entities
Molecule Chains Length Organism Details
LPS-assembly protein LptD A, C, E, G 577 Yersinia pestis Fragment: unp residues 225-780
Gene Name(s): lptD imp ostA YPO0495 y3680 YP_3684
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
LPS-assembly lipoprotein LptE B, D, F, H 198 Yersinia pestis Fragment: unp residues 21-207
Gene Name(s): lptE rlpB YPO2609 y1183 YP_1104
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Membrane Protein

Source: mpstruc | Group: BETA-BARREL

Subgroup Name: Lipopolysaccharide (LPS) Transport Proteins

Protein Name: LptD-LptE lipopolysaccharide transport complex


Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
C8E
Query on C8E

A, C, E, G (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTANE
C16 H34 O5
FEOZZFHAVXYAMB-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.75 Å
  • R-Value Free: 0.261
  • R-Value Work: 0.212
  • Space Group: P 1 21 1

Unit Cell:

Length (Å) Angle (°)
a = 82.89 α = 90.00
b = 176.35 β = 96.11
c = 143.85 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2016-03-23
  • Released Date: 2016-05-18
  • Deposition author(s): Botos, I., Mayclin, S.J., McCarthy, J.G., Buchanan, S.K.

Revision History

  • 2016-06-15
    Type: Citation | Details: Citation
  • 2016-05-25
    Type: Citation | Details: Citation