5IVA

The LPS Transporter LptDE from Pseudomonas aeruginosa, core complex

Structural Biology Knowledgebase: 5IVA SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.99 Å
  • R-Value Free: 0.295
  • R-Value Work: 0.248

Literature

Macromolecules
Sequence Display for 5IVA

Classification: TRANSPORT PROTEIN

Total Structure Weight: 98895.02

Macromolecule Entities
Molecule Chains Length Organism Details
LPS-assembly protein LptD A 646 Pseudomonas aeruginosa Fragment: unp residues 300-924
Gene Name(s): lptD imp ostA PA0595
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
LPS-assembly lipoprotein LptE B 192 Pseudomonas aeruginosa Fragment: unp residues 21-207
Gene Name(s): lptE PA3988
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Membrane Protein

Source: mpstruc | Group: BETA-BARREL

Subgroup Name: Lipopolysaccharide (LPS) Transport Proteins

Protein Name: LptD-LptE lipopolysaccharide transport complex


Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
C8E
Query on C8E

A (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTANE
C16 H34 O5
FEOZZFHAVXYAMB-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.99 Å
  • R-Value Free: 0.295
  • R-Value Work: 0.248
  • Space Group: C 2 2 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 148.92 α = 90.00
b = 155.99 β = 90.00
c = 115.65 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2016-03-20
  • Released Date: 2016-05-18
  • Deposition author(s): Botos, I., Buchanan, S.K.

Revision History

  • 2016-06-15
    Type: Citation | Details: Citation
  • 2016-05-25
    Type: Citation | Details: Citation