5IV8

The LPS Transporter LptDE from Klebsiella pneumoniae, core complex

Structural Biology Knowledgebase: 5IV8 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.94 Å
  • R-Value Free: 0.284
  • R-Value Work: 0.235

Literature

Macromolecules
Sequence Display for 5IV8

Classification: TRANSPORT PROTEIN

Total Structure Weight: 180405.00

Macromolecule Entities
Molecule Chains Length Organism Details
LPS biosynthesis protein A, C 601 Klebsiella pneumoniae Fragment: unp residues 203-782
Gene Name(s): imp lptD AGG09_10085 BN49_4289 PMK1_02359
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
LPS-assembly lipoprotein LptE B, D 182 Klebsiella pneumoniae Fragment: unp residues 20-196
Gene Name(s): lptE APU20_03225 SM74_00486 SM87_01358
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Membrane Protein

Source: mpstruc | Group: BETA-BARREL

Subgroup Name: Lipopolysaccharide (LPS) Transport Proteins

Protein Name: LptD-LptE lipopolysaccharide transport complex


Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
C8E
Query on C8E

A, C, D (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTANE
C16 H34 O5
FEOZZFHAVXYAMB-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.94 Å
  • R-Value Free: 0.284
  • R-Value Work: 0.235
  • Space Group: P 1 21 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 75.02 α = 90.00
b = 173.05 β = 111.26
c = 84.76 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2016-03-20
  • Released Date: 2016-05-18
  • Deposition author(s): Botos, I., McCarthy, J.G., Buchanan, S.K.

Revision History

  • 2016-06-15
    Type: Citation | Details: Citation
  • 2016-05-25
    Type: Citation | Details: Citation