5IMY

Trapped Toxin

Structural Biology Knowledgebase: 5IMY SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.4 Å
  • R-Value Free: 0.276
  • R-Value Work: 0.234

Literature

Macromolecules
Sequence Display for 5IMY

Classification: toxin / toxin receptor

Total Structure Weight: 126629.34

Macromolecule Entities
Molecule Chains Length Organism Details
Vaginolysin A, B 490 Gardnerella vaginalis Mutation: M30H, A31M, T333C, I348C
Gene Name(s): VLY vly
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
CD59 glycoprotein C, D 78 Homo sapiens Gene Name(s): CD59 Gene View MIC11 MIN1 MIN2 MIN3 MSK21
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Membrane Protein

Source: mpstruc | Group: BETA-BARREL

Subgroup Name: Adventitious Membrane Proteins: Beta-sheet Pore-forming Toxins/Attack Complexes

Protein Name: VLYml Cholesterol-dependent cytolysin, CD-59 responsive, bound to CD59D22A



Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.4 Å
  • R-Value Free: 0.276
  • R-Value Work: 0.234
  • Space Group: P 21 21 2

Unit Cell:

Length (Å) Angle (°)
a = 81.89 α = 90.00
b = 141.71 β = 90.00
c = 106.73 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2016-03-07
  • Released Date: 2016-08-24
  • Deposition author(s): Lawrence, S.L., Morton, C.J., Parker, M.W.

Revision History

  • 2016-09-14
    Type: Citation | Details: Citation