5DL8

Crystal structure of Acinetobacter baumannii OccAB4

Structural Biology Knowledgebase: 5DL8 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.2 Å
  • R-Value Free: 0.248
  • R-Value Work: 0.207

Literature

Macromolecules
Sequence Display for 5DL8

Classification: MEMBRANE PROTEIN

Total Structure Weight: 96421.89

Macromolecule Entities
Molecule Chains Length Organism Details
Benzoate transport porin BenP A, B 407 Acinetobacter baumannii Gene Name(s): benP1 ABUW_1854 AN415_01830 APC98_01495
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Membrane Protein

Source: mpstruc | Group: BETA-BARREL

Subgroup Name: Outer Membrane Carboxylate Channels (Occ)

Protein Name: OccAB4 outer membrane channel


Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
C8E
Query on C8E

A, B (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTANE
C16 H34 O5
FEOZZFHAVXYAMB-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CA
Query on CA

A, B CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.2 Å
  • R-Value Free: 0.248
  • R-Value Work: 0.207
  • Space Group: P 21 21 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 170.30 α = 90.00
b = 90.56 β = 90.00
c = 101.67 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2015-09-04
  • Released Date: 2016-02-03
  • Deposition author(s): Zahn, M., Basle, A., van den Berg, B.

Revision History

  • 2016-02-10
    Type: Citation | Details: Citation