5DL7

Crystal structure of Acinetobacter baumannii OccAB3

Structural Biology Knowledgebase: 5DL7 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.75 Å
  • R-Value Free: 0.191
  • R-Value Work: 0.168

Literature

Macromolecules
Sequence Display for 5DL7

Classification: MEMBRANE PROTEIN

Total Structure Weight: 50616.07

Macromolecule Entities
Molecule Chains Length Organism Details
Porin A 419 Acinetobacter baumannii Gene Name(s): ABUW_2771 AN415_02659 APC98_01580 ASZ73_14455 ASZ74_14730 ASZ76_14460 ASZ77_14220
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Membrane Protein

Source: mpstruc | Group: BETA-BARREL

Subgroup Name: Outer Membrane Carboxylate Channels (Occ)

Protein Name: OccAB3 outer membrane channel


Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
C8E
Query on C8E

A (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTANE
C16 H34 O5
FEOZZFHAVXYAMB-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CA
Query on CA

A CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.75 Å
  • R-Value Free: 0.191
  • R-Value Work: 0.168
  • Space Group: I 2 2 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 81.56 α = 90.00
b = 125.72 β = 90.00
c = 137.46 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2015-09-04
  • Released Date: 2016-02-03
  • Deposition author(s): Zahn, M., Basle, A., van den Berg, B.

Revision History

  • 2016-02-10
    Type: Citation | Details: Citation