4V3G

Crystal structure of CymA from Klebsiella oxytoca


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.51 Å
  • R-Value Free: 0.252
  • R-Value Work: 0.192

Literature

Macromolecules
Sequence Display for 4V3G

Classification: TRANSPORT PROTEIN

Total Structure Weight: 83064.14

Macromolecule Entities
Molecule Chains Length Organism Details
CYMA PROTEIN A, B 339 Klebsiella oxytoca Details: CLONING REGION INCLUDING HEPTAHISTIDINE TAG AT N-TERMINUS
Gene Name(s): cymA
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Membrane Protein

Source: mpstruc | Group: BETA-BARREL

Subgroup Name: Beta-Barrel Membrane Proteins: Porins and Relatives

Protein Name: CymA monomeric outer membrane protein (NHis-SeMet)


Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
C8E
Query on C8E

A, B (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTANE
C16 H34 O5
FEOZZFHAVXYAMB-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
MSE
Query on MSE
A, B L-PEPTIDE LINKING C5 H11 N O2 Se MET

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.51 Å
  • R-Value Free: 0.252
  • R-Value Work: 0.192
  • Space Group: P 1 21 1

Unit Cell:

Length (Å) Angle (°)
a = 42.59 α = 90.00
b = 105.23 β = 97.97
c = 111.82 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2014-10-18
  • Released Date: 2015-06-03
  • Deposition author(s): vandenBerg, B., Bhamidimarri, S.P., Kleinekathoefer, U., Winterhalter, M.

Revision History

  • 2015-06-24
    Type: Citation | Details: JRNL
  • 2015-06-10
    Type: Source and taxonomy | Details: SOURCE
  • 2015-06-10
    Type: Citation | Details: JRNL