4Q35

Structure of a membrane protein

Structural Biology Knowledgebase: 4Q35 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.39 Å
  • R-Value Free: 0.231
  • R-Value Work: 0.186

Literature

Macromolecules
Sequence Display for 4Q35

Classification: MEMBRANE PROTEIN

Total Structure Weight: 115462.20

Macromolecule Entities
Molecule Chains Length Organism Details
LPS-assembly protein LptD A 802 Shigella flexneri Gene Name(s): lptD imp ostA SF0051 S0053
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
LPS-assembly lipoprotein LptE B 175 Shigella flexneri Gene Name(s): lptE rlpB SF0640 S0662
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Membrane Protein

Source: mpstruc | Group: BETA-BARREL

Subgroup Name: Lipopolysaccharide (LPS) Transport Proteins

Protein Name: LptE lipopolysaccharide transport protein


Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
C8E
Query on C8E

A (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTANE
C16 H34 O5
FEOZZFHAVXYAMB-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
LDA
Query on LDA

A LAURYL DIMETHYLAMINE-N-OXIDE
C14 H31 N O
SYELZBGXAIXKHU-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
SO4
Query on SO4

A, B SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.39 Å
  • R-Value Free: 0.231
  • R-Value Work: 0.186
  • Space Group: C 1 2 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 240.82 α = 90.00
b = 116.62 β = 103.71
c = 68.04 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2014-04-11
  • Released Date: 2014-06-25
  • Deposition author(s): Huang, Y., Qiao, S., Luo, Q., Zhao, Y.

Revision History

  • 2014-07-09
    Type: Citation | Details: Citation update