4OL8

Ty3 reverse transcriptase bound to DNA/RNA

Structural Biology Knowledgebase: 4OL8 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.1 Å
  • R-Value Free: 0.296
  • R-Value Work: 0.227

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4OL8

Classification: TRANSFERASE HYDROLASE / RNA / DNA

Total Structure Weight: 241732.08


Macromolecule Entities
Molecule Chains Length Organism Details
Reverse transcriptase/ribonuclease H A, B, E, F 478 Saccharomyces cerevisiae EC#: 2.7.7.49 IUBMB 2.7.7.7 IUBMB 3.1.26.4 IUBMB
Fragment: UNP residues 536-1101
Mutation: D426N
Gene Name(s): TY3B-G YGRWTy3-1 POL YGR109W-B G5984
Macromolecule Entities
Molecule Chains Length Organism Details
5'-R(*CP*UP*GP*AP*GP*AP*GP*AP*GP*AP*GP*GP*AP*AP*GP*AP*UP*G)-3' C, G 18 synthetic
5'-D(*CP*AP*TP*CP*TP*TP*CP*CP*TP*CP*TP*CP*TP*CP*TP*C)-3' D, H 16 synthetic

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
SO4
Query on SO4

B SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
MSE
Query on MSE
A, B, E, F L-PEPTIDE LINKING C5 H11 N O2 Se MET

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.1 Å
  • R-Value Free: 0.296
  • R-Value Work: 0.227
  • Space Group: P 21 21 2

Unit Cell:

Length (Å) Angle (°)
a = 320.70 α = 90.00
b = 75.06 β = 90.00
c = 108.35 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2014-01-23
  • Released Date: 2014-03-05
  • Deposition author(s): Nowak, E., Miller, J.T., Bona, M.K., Studnicka, J., Szczepanowski, R.H., Jurkowski, J., Le Grice, S.F.J., Nowotny, M.

Revision History

  • 2014-04-16
    Type: Citation | Details: Citation update
  • 2014-04-02
    Type: Citation | Details: Citation update
  • 2014-03-12
    Type: Entry authorship | Details: corrected author list