4NWZ

Structure of bacterial type II NADH dehydrogenase from Caldalkalibacillus thermarum at 2.5A resolution


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.5 Å
  • R-Value Free: 0.269
  • R-Value Work: 0.217

Literature

Macromolecules
Sequence Display for 4NWZ

Classification: OXIDOREDUCTASE

Total Structure Weight: 181432.03

Macromolecule Entities
Molecule Chains Length Organism Details
FAD-dependent pyridine nucleotide-disulfide oxidoreductase A, B, C, D 405 Caldalkalibacillus thermarum Gene Name(s): CathTA2_0279
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Membrane Protein

Source: mpstruc | Group: MONOTOPIC MEMBRANE PROTEINS

Subgroup Name: Dehydrogenases

Protein Name: NDH-2 NADH dehydrogenase


Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
FAD
Query on FAD

A, B, C, D FLAVIN-ADENINE DINUCLEOTIDE
C27 H33 N9 O15 P2
VWWQXMAJTJZDQX-UYBVJOGSSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.5 Å
  • R-Value Free: 0.269
  • R-Value Work: 0.217
  • Space Group: P 1 21 1

Unit Cell:

Length (Å) Angle (°)
a = 72.79 α = 90.00
b = 114.48 β = 92.04
c = 130.59 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2013-12-07
  • Released Date: 2014-02-19
  • Deposition author(s): Nakatani, Y., Heikal, A., Lott, J.S., Sazanov, L.A., Baker, E.N., Cook, G.M.

Revision History

No revisions since initial release