4LJ0

Nab2 Zn fingers complexed with polyadenosine

Structural Biology Knowledgebase: 4LJ0 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.15 Å
  • R-Value Free: 0.207
  • R-Value Work: 0.195

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4LJ0

Classification: RNA BINDING PROTEIN

Total Structure Weight: 23423.22


Macromolecule Entities
Molecule Chains Length Organism Details
Nab2 A, B 66 Chaetomium thermophilum Fragment: Nab2 Zn fingers 3-5, UNP residues 401-466
Gene Name(s): CTHT_0057680
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Macromolecule Entities
Molecule Chains Length Organism Details
polyadenosine RNA C, D, E 8 synthetic

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
ZN
Query on ZN

A, B ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ACT
Query on ACT

A ACETATE ION
C2 H3 O2
QTBSBXVTEAMEQO-UHFFFAOYSA-M
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MG
Query on MG

C, D MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.15 Å
  • R-Value Free: 0.207
  • R-Value Work: 0.195
  • Space Group: P 31 2 1

Unit Cell:

Length (Å) Angle (°)
a = 90.93 α = 90.00
b = 90.93 β = 90.00
c = 54.08 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2013-07-04
  • Released Date: 2013-10-09
  • Deposition author(s): Stewart, M., Kuhlmann, S.I., Valkov, E.

Revision History

  • 2014-01-22
    Type: Citation | Details: Citation update