4LDV

Crystal structure of the DNA binding domain of A. thailana auxin response factor 1

Structural Biology Knowledgebase: 4LDV SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.45 Å
  • R-Value Free: 0.243
  • R-Value Work: 0.209

Literature

Macromolecules
Sequence Display for 4LDV

Classification: TRANSCRIPTION

Total Structure Weight: 41684.92

Macromolecule Entities
Molecule Chains Length Organism Details
Auxin response factor 1 A 362 Arabidopsis thaliana Fragment: DNA Binding Domain
Gene Name(s): ARF1 Gene View At1g59750 F23H11.7
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
IOD
Query on IOD

A IODIDE ION
I
XMBWDFGMSWQBCA-UHFFFAOYSA-M
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
FMT
Query on FMT

A FORMIC ACID
C H2 O2
BDAGIHXWWSANSR-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CL
Query on CL

A CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.45 Å
  • R-Value Free: 0.243
  • R-Value Work: 0.209
  • Space Group: C 2 2 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 88.36 α = 90.00
b = 126.26 β = 90.00
c = 83.67 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2013-06-25
  • Released Date: 2014-02-12
  • Deposition author(s): boer, D.R., Freire-Rios, A., van den Berg, W.M.A., Weijers, D., Coll, M.

Revision History

No revisions since initial release