4KIS

Crystal Structure of a LSR-DNA Complex

Structural Biology Knowledgebase: 4KIS SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.2 Å
  • R-Value Free: 0.256
  • R-Value Work: 0.236

Literature

Macromolecules
Sequence Display for 4KIS

Classification: recombination / DNA

Total Structure Weight: 221190.80


Macromolecule Entities
Molecule Chains Length Organism Details
Putative integrase [Bacteriophage A118] A, B, C, D 328 Listeria innocua Fragment: C-terminal domain
Gene Name(s): int
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Macromolecule Entities
Molecule Chains Length Organism Details
DNA (26-MER) E, G, I, K 26 synthetic attP half-site
DNA (26-MER) F, H, J, L 26 synthetic attP half-site

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
ZN
Query on ZN

A, B, C, D ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CA
Query on CA

A, B, C, D, E CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.2 Å
  • R-Value Free: 0.256
  • R-Value Work: 0.236
  • Space Group: I 2 3
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 290.75 α = 90.00
b = 290.75 β = 90.00
c = 290.75 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2013-05-02
  • Released Date: 2013-07-10
  • Deposition author(s): Rutherford, K., Yuan, P., Perry, K., Van Duyne, G.D.

Revision History

  • 2013-10-23
    Type: Citation | Details: Citation update